On Mon, Nov 11, 2013 at 5:29 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Thu, Nov 7, 2013 at 4:51 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi Michiel,
Did you finish wrapping samtools idxstats? I can't see it on the Tool Shed...
If not, I may tackle this shortly.
Peter
I've implemented a 'samtools idxstats' wrapper, which seems to be working for me: https://github.com/peterjc/pico_galaxy/blob/master/tools/samtools_idxstats/s...
Test Tool Shed: http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats
Main Tool Shed (pending - I want to see the overnight test results on the Test Tool Shed first): http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats
Having sorted out the dependency management, and seen the test pass on the Test Tool Shed, this "samtools idxstats" wrapper is now live on the main Tool Shed as well: http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats Peter