PS: I just tried running all the delete and purge scripts without further paramters as described on http://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20and%20Datasets. However alls the dat files are still there in the /files/000 folder. How does one execute the scripts correctly to delete files which have been deleted in the history. Shouldn't galaxy execute the scripts by itself?
Best
Stan
Von: Dannon Baker [mailto:dannon.baker@gmail.com]
Gesendet: Dienstag, 15. Oktober 2013 16:49
An: Peter Cock
Cc: Stanislas Werfel; galaxy-dev@lists.bx.psu.edu
Betreff: Re: [galaxy-dev] /dev/xvda1 filling up when downloading large files via ftp
And I can answer the first part; this is a known issue we're trying to nail down and get a fix out for this week, along with a base volume update to address other issues. Trello card: https://trello.com/c/8XSIeoG0
On Tue, Oct 15, 2013 at 10:23 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Tue, Oct 15, 2013 at 10:13 AM, Stanislas Werfel
<Werfel@ipt.med.tum.de> wrote:
>
> I'm also having another issue: when I delete files in the history in galaxy,
> they don't acually get deleted in the files/000/ folder. And galaxy is still
> showing them under "Using ..." in the total space used. So if I download
> a 3GB fastq file, then delete everything in the history, Using is still showing
> 3GB and the file is still there in the folder.
I can't help with the first problem, but I believe the second is easier:
The data isn't immediately deleted and therefore your usage figure
(and quota) do not get updated right away. This is usually done via a
house keeping cron job, see:
http://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20and%20Datasets
Peter
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