{
    "a_galaxy_workflow": "true", 
    "annotation": "", 
    "format-version": "0.1", 
    "name": "workflow_bug", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "collapse reads", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 263.5, 
                "top": 124
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"strand\": \"\\\"False\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "collapse reads", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 260.5, 
                "top": 261
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"strand\": \"\\\"False\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "2": {
            "annotation": "", 
            "id": 2, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "collapse reads", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 266.5, 
                "top": 388
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"strand\": \"\\\"False\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "3": {
            "annotation": "", 
            "id": 3, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "collapse reads", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 287.5, 
                "top": 525
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"strand\": \"\\\"False\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "4": {
            "annotation": "", 
            "id": 4, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "collapse reads", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 308.5, 
                "top": 650
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"strand\": \"\\\"False\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "5": {
            "annotation": "", 
            "id": 5, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "collapse reads", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 343.5, 
                "top": 754
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"strand\": \"\\\"False\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "6": {
            "annotation": "", 
            "id": 6, 
            "input_connections": {
                "formatType|inputFileName": [
                    {
                        "id": 0, 
                        "output_name": "outputFileGff"
                    }, 
                    {
                        "id": 1, 
                        "output_name": "outputFileGff"
                    }, 
                    {
                        "id": 2, 
                        "output_name": "outputFileGff"
                    }, 
                    {
                        "id": 3, 
                        "output_name": "outputFileGff"
                    }, 
                    {
                        "id": 4, 
                        "output_name": "outputFileGff"
                    }, 
                    {
                        "id": 5, 
                        "output_name": "outputFileGff"
                    }
                ]
            }, 
            "inputs": [], 
            "name": "clusterize by sliding windows", 
            "outputs": [
                {
                    "name": "outputFileGff", 
                    "type": "gff3"
                }
            ], 
            "position": {
                "left": 565.5, 
                "top": 219
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/clusterizeBySlidingWindows/1.0.0", 
            "tool_state": "{\"__page__\": 0, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"__rerun_remap_job_id__\": null, \"OptionTag\": \"{\\\"tag\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"overlap\": \"\\\"50\\\"\", \"OptionsOperation\": \"{\\\"operation\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionWriteTag\": \"{\\\"writeTags\\\": [{\\\"__index__\\\": 0, \\\"value\\\": \\\"nbElementsA\\\"}, {\\\"__index__\\\": 1, \\\"value\\\": \\\"nbElementsB\\\"}, {\\\"__index__\\\": 2, \\\"value\\\": \\\"nbElementsC\\\"}, {\\\"__index__\\\": 3, \\\"value\\\": \\\"nbElementsD\\\"}, {\\\"__index__\\\": 4, \\\"value\\\": \\\"nbElementsE\\\"}, {\\\"__index__\\\": 5, \\\"value\\\": \\\"nbElementsF\\\"}], \\\"__current_case__\\\": 0, \\\"writeTag\\\": \\\"Yes\\\"}\", \"strands\": \"\\\"True\\\"\", \"size\": \"\\\"100\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }
    }
}