Liusong, This problem has been corrected in our galaxy-central repository, but the fix must not yet be available in our galaxy-dist repository (which you are using). I believe a new release to the galaxy-dist repository will be available in the next few days if you want to wait for it. If not, change your ~/.hg/hgrc file so that the default path pulls from our galaxy-central repository, something like this. [paths] default = https://<your user>@bitbucket.org/galaxy/galaxy-central Sorry for the inconvenience, Greg Von Kuster On Mar 7, 2012, at 1:13 PM, Liusong Yang wrote:
Hi Greg, When as admin I want to install a tool from main tool shed to local galaxy,I got this error.
URL: http://128.146.132.147:1234/admin_toolshed/install_repository?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repo_info_dict=ae427cbeabf65b952fc515302aad902c2f9f0112:7b22686d6d6572223a205b22484d4d657220746f6f6c73222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f6564776172642d6b6972746f6e2f686d6d6572222c2022363666383236326531363836225d7d&includes_tools=True File '/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 173 in decorator return func( self, trans, *args, **kwargs ) File '/home/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py', line 322 in install_repository tool_panel_section_select_field = build_tool_panel_section_select_field( trans ) File '/home/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py', line 804 in build_tool_panel_section_select_field options.append( ( tool_section.name, tool_section.id ) ) AttributeError: 'ToolSectionLabel' object has no attribute 'name'
Your help are absolutely appreciated.
Liusong
On Wed, Mar 7, 2012 at 9:58 AM, Greg Von Kuster <greg@bx.psu.edu> wrote:
Hi Lisa,
It looks like you are current with the tip from the galaxy-dist repository. What are you attempting to do, what exactly is the error you are seeing, and what is shown in your paster log?
Thanks,
Greg Von Kuster
On Mar 6, 2012, at 9:08 PM, Lisa wrote:
Hi Greg, I got the exactly same error today. I can install tools from main tool shed before without any problem.
I tried hg incoming and hg pull -u to update my local instance.
Here is the result for hg summary
(galaxy_env)galaxy@osbc-147:~/galaxy-dist$ hg summary parent: 6621:26920e20157f tip Improve language in 'Import workflow' dialog. branch: default commit: 34 modified, 93 unknown update: (current)
It looks like we are using diff branch (?) How could I apply your modification? Also I am not using local tool shed either.
Thanks
Lisa
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