Thanks, edited the wrong file. Fenglou On 26 February 2014 16:40, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Fenglou,
which file have you edited? Under tool-data or tool-data/ toolshed.g2.bx.psu.edu/repos/iuc/gatk2/340633249b3d/gatk2_picard_index.loc?
Cheers, Bjoern
Am 26.02.2014 22:37, schrieb Fenglou Mao:
Dear All,
I installed gatk2 from tool_shed, and see below for my gatk2_picard_index.loc
Anyone can tell me what the mistake is? Old gatk can use this file to find all reference genomes, but gatk2 cannot.
Fenglou
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