I am trying to integrate the following tools in galaxy but I am not able to find their corresponding code in the "tool_conf.xml" file. If you can point me to those, it'd we swell.

1) NGS: Variant detection

2) NGS: Picard(beta)

3) BEDTools

4) SnpEff

Thanks,

VJ.

On Tue, May 28, 2013 at 12:42 PM, Dannon Baker <dannon.baker@gmail.com> wrote:

I'm assuming you're referring to main.g2.bx.psu.edu's tool configuration as a reference.  Some of these components are installed via the tool shed, and others may have been manually added to main and are not included in the base tool_conf.xml.sample.  I may be able to point you in the right direction, though -- what is it that you're trying to do?

-Dannon

On Tue, May 21, 2013 at 3:31 PM, vijayalakshmi <vijiraghs@gmail.com> wrote:

Hi all,

   I am trying to get the "tool_conf.xml" <section> code corresponding to the following topics listed below. I am unable to find it in both the default build and the stable build in bitbucket. If you can point me to where I can find it, it'd be swell.

1) NGS: Variant detection

2) NGS: Picard(beta)

3) BEDTools

4) SnpEff

Thanks,

VJ.

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