Thank you Dan,

any idea of when is the next main server update?

On Tue, 27 Apr 2010 11:08:24 -0400, Daniel Blankenberg <dan@bx.psu.edu> wrote:

Hi Claudia,

I've added support for ELAND and ELANDMULTI formats to Galaxy and proper support for these to MACS in rev 3701:b633d836ce07, which is now available on the test server. It will be available on the main server the next time it is updated.

Thanks for using Galaxy,

Dan

On Apr 26, 2010, at 5:55 PM, Claudia Cattoglio wrote:

Hi,

I am trying to use MACS among your NGS peak-calling tools, but I can't work it out.

I have ELAND files; what should I specify as a file format when uploading them? There is no ELAND format in the 'upload file' window. If I choose BED as a format, after running MACS I get no results (empty) and a Strand Format Error message, although I am sure the strand information in my ELAND file is correct (9th column, F or R). If I choose TABULAR, instead, my files are not even visualized in the MACS dropdown menu.

Is this a problem of input file format, as I suspect?

Thanks,

-- 
Claudia Cattoglio, PhD

Tjian Lab
University of California, Berkeley
Department of Molecular & Cell Biology
16 Barker Hall # 3204
Berkeley, CA 94720-3204

phone: (510) 643-3762

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-- 
Claudia Cattoglio, PhD

Tjian Lab
University of California, Berkeley
Department of Molecular & Cell Biology
16 Barker Hall # 3204
Berkeley, CA 94720-2321

phone: (510) 643-3762