Hi again,

Emboss_datatypes is installad via tool shed. The ‘View datatypes registry’ in the Adminstration page, shows all registered data types, including the emboss ones, like e.g. genbank.

However, the ‘Upload File’ tool does not show genbank in the ‘File Format’ dropdown. How can one configure the upload1 tool so that all registered formats are listed ?

I don’t understand the from_parameter hocus-pocus in this line (upload.xml):

<options from_parameter="tool.app.datatypes_registry.upload_file_formats" transform_lines="[ &quot;%s%s%s&quot; % ( line, self.separator, line ) for line in obj ]">

 

The workaround which is used up to now is upload genbank sequences as txt format and change the format later via the history. But that is a 2-step operation, guess there should be a way taking only 1 step ?

Regards,

Marc

________________________________________
THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE.
If the reader of this E-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately at ablynx@ablynx.com. Thank you for your co-operation.
"NANOBODY" and "NANOCLONE" are registered trademarks of Ablynx N.V.
________________________________________