Hi Namit,

This is an oversight and that tool should be installed by default. We'll make it so in the next Cloudman release.

That said, it's really easy to install this (and other tools) on your cloud instances using the toolshed. Steps:

- Make yourself an admin user (see the cloudman admin interface for an easy way to do this).

- Log into your Galaxy as this admin.

- Click "Admin" in the masthead, "Search and browse tool sheds" on the left side, select "Galaxy main tool shed", search for "fastq_groomer".

- Click fastq_groomer and then pick "Install to Galaxy", following the rest of the prompts.

Let me know if you run into any issues with this,

-Dannon

On Fri, Oct 10, 2014 at 1:10 PM, NAMIT KUMAR <nk336@scarletmail.rutgers.edu> wrote:

Hello,

I am using galaxy on amazon web servers ( AMI: ami-a7dbf6ce; Name: Galaxy CloudMan 2.3).
This is a setup I have used several time in the past with no issue, for suddenly since yesterday- there is NO option of fastq groomer tool on this ami.

fastq groomer tool is still available on public server but not on aws cloudman.

Anyone has any information on this?

best,
Namit

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