20 Apr
2012
20 Apr
'12
10:12 a.m.
Peter and Lance;
I've made the update to Brad's script from the Tool Shed (attached), switching to using genomeCoverageBed and bedGraphToBigWig (based on the approach used in Lance's script), although in doing so I dropped the region support (which wasn't exposed to the Galaxy interface anyway). Since genomeCoverageBed doesn't support this directly, we could use samtools view for this I think - if you want this functionality.
Awesome, thanks for doing this so quickly. Leaving out the region support for now is fine with me. I gave both of you write access to that repo on the Toolshed so feel free to check in and edit away. Thanks again for tackling this, Brad