Re: [galaxy-dev] DRMAA_python on OS X 10.4

John Eppley wrote:

Has anyone had success getting galaxy to work with SGE on OS X 10.4?

I cannot get DRMAA_python to compile/scramble. The linker does not recognize the -R flag: /usr/bin/ld: unknown flag: -R/common/sge/lib/darwin

I can get it to compile by removing that flag, but galaxy dies when it tries to use the library compiled this way.

Hi John, This is a runtime linker issue - OS X (10.4 especially) does runtime linking oddly. I've committed a fix for it in changeset 3161:b400212305b6, which should be on our public repository in a few days. Or, you can pull directly from our central dev repo at: http://bitbucket.org/galaxy/galaxy-central/ Thanks for finding and reporting this. --nate