Hi,I think that you don’t need :.$__tool_directory__/<command interpreter="perl">rm_consecutive_sameScore.pl "$input1" "$output1"</command>seems enough if you join the script .pl with your wrapper .xml
Gildas-----------------------------------------------------------------
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateforme ABiMS (Analyses and Bioinformatics for Marine Science)
Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81
http://abims.sb-roscoff.fr
------------------------------------------------------------------Le 23 févr. 2016 à 17:46, Xianrong Wong <wongxr@gmail.com> a écrit :<jose123.xml>