Hi Gildas,

thank you for the prompt reply! I actually have tried multiple paths to the script, even just the script name as you suggested but it's always giving the same error of "no such file or directory".

On Tue, Feb 23, 2016 at 11:51 AM, Gildas Le Corguillé <lecorguille@sb-roscoff.fr> wrote:

Hi,

I think that you don’t need :

.$__tool_directory__/

<command interpreter="perl">rm_consecutive_sameScore.pl "$input1" "$output1"</command>
seems enough if you join the script .pl with your wrapper .xml

Gildas

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Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateforme ABiMS (Analyses and Bioinformatics for Marine Science)

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81
http://abims.sb-roscoff.fr
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Le 23 févr. 2016 à 17:46, Xianrong Wong <wongxr@gmail.com> a écrit :

<jose123.xml>