On Apr 16, 2013, at 9:37 AM, Ramon Tiburski wrote:
I,m getting this error when I try to convert some data, can someone help me?
Traceback (most recent call last): File "/home/ramao/galaxy/lib/galaxy/jobs/runners/local.py", line 156, in run_job job_wrapper.finish( stdout, stderr, exit_code ) File "/home/ramao/galaxy/lib/galaxy/jobs/__init__.py", line 412, in finish dataset.datatype.set_meta( dataset, overwrite = False ) #call datatype.set_meta directly for the initial set_meta call during dataset creation File "/home/ramao/shed_tools/web.uniparthenope.it/repos/montella/galaxy_es_core/a8f8a904173c/galaxy_es_core/earthsystem.py", line 318, in set_meta NetCDF.set_meta(self,dataset) File "/home/ramao/shed_tools/web.uniparthenope.it/repos/montella/galaxy_es_core/a8f8a904173c/galaxy_es_core/earthsystem.py", line 261, in set_meta ncml= execAndGetStdout("ncdump -x "+dataset.file_name) File "/home/ramao/shed_tools/web.uniparthenope.it/repos/montella/galaxy_es_core/a8f8a904173c/galaxy_es_core/earthsystem.py", line 48, in execAndGetStdout output=local(cmd, capture=True) File "/home/ramao/galaxy/eggs/Fabric-1.4.2-py2.7.egg/fabric/operations.py", line 1012, in local error(message=msg, stdout=out, stderr=err) File "/home/ramao/galaxy/eggs/Fabric-1.4.2-py2.7.egg/fabric/utils.py", line 305, in error return func(message) File "/home/ramao/galaxy/eggs/Fabric-1.4.2-py2.7.egg/fabric/utils.py", line 26, in abort sys.exit(1) SystemExit: 1
Hi Ramon, For a definite answer, you'll want to contact the tool/datatype author. However, I would guess that the `ncdump` command is failing for some reason, and that would be the place to look. --nate
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