Hi Nate, Thanks a lot for your answer. Embarrasingly, it turns out that it was something obvious I was not getting. I have no excuse as it is pointed out clearly in the wiki - "run Galaxy as a non-root user" - torque does not like jobs to be submitted as root apparently. I've now set up a galaxy user, installed galaxy into the galaxy_user home directory and configured apache's httpd.conf file (all as indicated in the wiki) and it works! Thanks alot, Grainne.
Hi Grainne,
In your test script, could you see what value pbs.pbs_default() is returning? Also, check that one of the following is true:
'b110-sc-hdn' is set in /etc/hosts and is the same IP address that is resolved by your DNS server?
OR
'b110-sc-hdn' does not appear in /etc/hosts, and resolves via DNS to the IP address of your server.
--nate
Any help would be very much appreciated and thanks alot for an exceptional tool!
Grainne.
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