Hi Nate, we encountered an addition bug related to the object-store: Traceback (most recent call last): File "/usr/local/galaxy/galaxy- dist/lib/galaxy/jobs/runners/__init__.py", line 153, in prepare_job job_wrapper.prepare() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line 712, in prepare self.command_line, self.extra_filenames = tool_evaluator.build() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/tools/evaluation.py", line 348, in build self.__build_command_line( ) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/tools/evaluation.py", line 364, in __build_command_line command_line = fill_template( command, context=param_dict ) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/template.py", line 9, in fill_template return str( Template( source=template_text, searchList=[context] ) ) File "/usr/local/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs2.egg/Cheetah/Template.py", line 1004, in __str__ return getattr(self, mainMethName)() File "cheetah_DynamicallyCompiledCheetahTemplate_1402663002_65_42228.py", line 94, in respond File "/usr/local/galaxy/galaxy-dist/lib/galaxy/tools/wrappers.py", line 203, in __getattr__ return getattr( self.dataset, key ) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 1493, in extra_files_path return self.dataset.extra_files_path File "/usr/local/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 1349, in extra_files_path return self.object_store.get_filename( self, dir_only=True, extra_dir=self._extra_files_path or "dataset_%d_files" % self.id ) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 416, in get_filename return self.__call_method('get_filename', obj, ObjectNotFound, True, **kwargs) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 436, in __call_method % ( method, str( obj ), str( kwargs ) ) ) ObjectNotFound: objectstore, __call_method failed: get_filename on <galaxy.model.Dataset object at 0x7f7ee103fb90>, kwargs: {'dir_only': True, 'extra_dir': 'dataset_118453_files'} It should be reproducible with the latest Galaxy stable release and the latest NCBI Blast+ wrappers if you are trying to generate a Blast+ database. Thanks, Bjoern 2014-06-12 16:50 GMT+02:00 Björn Grüning <bjoern.gruening@gmail.com>:
Hi Nate,
yes that is fixing it for me!
Thanks! Bjoern
Am 12.06.2014 16:26, schrieb Nate Coraor:
writeable (e.g. what you have new_files_path set to), that'd confirm it.