Do you have a matching dependency declaration in mytool.xml? Peter On Mon, Dec 22, 2014 at 9:56 AM, KRESS Arnaud (ESP) <akress@unistra.fr> wrote:
Hi gentlemen, I am currently struggling to create a custom package (to share via a toolshed) that would include a tool definition file and the associated binary. Once installed, I can launch a job but I get the following error message:
mytool.sh: line 14: mytool: unknown command
It seems that the PATH was not correctly set. What am I doing wrong ?
My directory tree in my package: . ├── mytool.sh ├── mytool.xml ├── bin │ └── mytool └── tool_dependencies.xml
Here is my tool_dependencies.xml file content:
<?xml version="1.0"?> <tool_dependency> <package name="mytool" version="1.0"> <install version="1.0"> <actions> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> </readme> </package> </tool_dependency>
Thank you, AK ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/