John, Thanks for this. I am new to managing galaxy, but how do I go about updating my galaxy to reflect these changes? I found directions on https://wiki.galaxyproject.org/Admin/GetGalaxy#Keep_your_code_up_to_date about pulling changes from the bitbucket repository. Does this preserve my previous galaxy settings? Do I have to back up before I do this? I spent considerable time to get galaxy to work on the cluster and don't want to ruin it. Thank you Ravi On Apr 2, 2014, at 9:58 AM, John Chilton <jmchilton@gmail.com> wrote:
This looks very to similar to an issue discussed here: http://dev.list.galaxyproject.org/pbs-runner-deserializes-server-names-as-un....
The default branch of Galaxy contains changeset that should address this issue - https://bitbucket.org/galaxy/galaxy-central/commits/af5577a24c155fa04aa607ff....
Hope this helps.
-John
On Wed, Apr 2, 2014 at 11:35 AM, Ravi Alla <ravi.alla@berkeley.edu> wrote:
Hi guys, I keep getting an error everytime I start up the galaxy server. I am guessing this has to do with a job that galaxy is trying to resume and cannot find.
galaxy.jobs.runners ERROR 2014-04-02 09:31:10,889 Unhandled exception checking active jobs Traceback (most recent call last): File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/runners/__init__.py", line 366, in monitor self.check_watched_items() File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 363, in check_watched_items ( failures, statuses ) = self.check_all_jobs() File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 452, in check_all_jobs c = pbs.pbs_connect( pbs_server_name ) TypeError: in method 'pbs_connect', argument 1 of type 'char *'
Because of this error I cannot get any other jobs to run either. They just sit queued on the cluster. Any ideas? Thanks
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/