Lovely, thanks! I've added a couple of links pointing to that page :) It does list a few of relevant environment variables, $INSTALL_DIR, $REPOSITORY_INSTALL_DIR and $TMP_WORK_DIR, but does not comment on if these directory names include a trailing slash or not... Peter On Wed, Sep 2, 2015 at 12:12 PM, Nicola Soranzo <nsoranzo@tiscali.it> wrote:
Hi Peter, the page you are looking for is:
https://wiki.galaxyproject.org/ToolDependenciesTagSets
I think it should be better linked, I had to bookmark it!
Cheers, Nicola
Il 02.09.2015 12:33 Peter Cock ha scritto:
Hi all,
Is there a page on the wiki describing the tool_dependencies.xml file syntax? Searching finds pages with examples, e.g.
https://wiki.galaxyproject.org/ToolsWithDependenciesInSameRepository https://wiki.galaxyproject.org/ComplexRepositoryDependencies
What I am looking for is something like the wiki page for the tool XML: https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
This missing page should do things like list all the XML tags, for example showing all the permitted actions in tool_dependencies.xml?
What are the pre-defined environment variables like $INSTALL_DIR, and my specific question today - does that have a trailing slash or not?
Peter