Where would the configuration be in the galaxy server that would cause something like this. This worked in the previous year-old version of galaxy that was installed. On 3/11/14, 6:21 AM, Peter Cock wrote:
This looks like Galaxy asking for part of a BAM file, using a byte range request, but the server hosting the BAM file is not handling this. It is probably a configuration error on that server, or perhaps in a proxy?
Peter
On Mon, Mar 10, 2014 at 11:09 PM, Pete Schmitt <Peter.R.Schmitt@dartmouth.edu <mailto:Peter.R.Schmitt@dartmouth.edu>> wrote:
Latest version of galaxy running on CentOS 5.10 with python 2.6.8
When attempting to use display at UCSC main <http://dirigo.mdibl.org:8080/display_application/257f23ebf7c87bff/ucsc_bam/main> test <http://dirigo.mdibl.org:8080/display_application/257f23ebf7c87bff/ucsc_bam/test>
There is an error at UCSC: unable to get the display-data
Error from paster.log:
128.114.119.136 - - [10/Mar/2014:18:52:56 -0400] "GET /display_application/257f23ebf7c87bff/ucsc_bam/main/0a34505ca0c7b470/data/galaxy_257f23ebf7c87bff.bam HTTP/1.0" 200 817113 "-" "genome.ucsc.edu/net.c <http://genome.ucsc.edu/net.c>" ---------------------------------------- Exception happened during processing of request from ('128.114.119.136', 29811) Traceback (most recent call last): File "/nextgen3/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpserver.py", line 1068, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib64/python2.6/SocketServer.py", line 322, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib64/python2.6/SocketServer.py", line 618, in __init__ self.finish() File "/usr/lib64/python2.6/SocketServer.py", line 661, in finish self.wfile.flush() File "/usr/lib64/python2.6/socket.py", line 297, in flush self._sock.sendall(buffer(data, write_offset, buffer_size)) error: [Errno 32] Broken pipe
I'm not sure what the error above means.
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-- * Pete Schmitt Technical Director: Discovery Cluster NH INBRE Grid Computational Genetics Lab Institute for Quantitative Biomedical Sciences Dartmouth College, HB 6203 L12 Berry/Baker Library Hanover, NH 03755 Phone: 603-646-8109 http://discovery.dartmouth.edu http://columbia.dartmouth.edu/grid http://www.epistasis.org http://iQBS.org *
