Galaxy itself uses samtools for many operations, which is different
from when samtools is called as a dependency of a tool run by the
Galaxy user.
However, the Docker image ought to take care of that - can you
give more details of which Docker image you are using (URL,
version, etc)?
Thanks,
Peter
On Mon, Aug 14, 2017 at 5:08 PM, Deepak Tanwar <
dktanwar@hotmail.com> wrote:
Hello everyone,
I am facing problem in uploading bam files on Galaxy. I am using Docker
image of Galaxy.
I have installed samtools version 0.1.19 and added it to the path
/tool_deps/samtools/0.1.19/iuc/package_samtools_0_1_19/c9bd782f5342/bin/samtools
Error: Exception: Attempting to use functionality requiring samtools, but it
cannot be located on Galaxy's PATH.
Thank you,
Deepak
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