Just an additional problem. I retried running the scripts, and I got this error when I was doing the purging: Removing disk, file Error attempting to purge data file: Traceback (most recent call last): File "scripts/cleanup_datasets/cleanup_datasets.py", line 518, in <module> if __name__ == "__main__": main() File "scripts/cleanup_datasets/cleanup_datasets.py", line 116, in main purge_datasets( app, cutoff_time, options.remove_from_disk, info_only = options.info_only, force_retry = options.force_retry ) File "scripts/cleanup_datasets/cleanup_datasets.py", line 353, in purge_datasets _purge_dataset( app, dataset, remove_from_disk, info_only = info_only ) File "scripts/cleanup_datasets/cleanup_datasets.py", line 478, in _purge_dataset print "Error attempting to purge data file: ", dataset.file_name, " error: ", str( exc ) File "/home/applications/galaxy-dist/lib/galaxy/model/__init__.py", line 651, in get_file_name assert self.object_store is not None, "Object Store has not been initialized for dataset %s" % self.id AssertionError: Object Store has not been initialized for dataset 1 Can you please enlighten me on this error? I am just new to Galaxy and Python, so I'm quite at a loss here. Thanks in advance for any help! On Fri, Apr 20, 2012 at 10:24 AM, Ciara Ledero <lederoc@gmail.com> wrote:
Dear all,
I was able to execute the cleanup scripts in galaxy, using the -r option with them. According to what I've read, that option removes the datasets from the disk. But why didn't that happen? Also, since I have 'deleted and purged' the files, can I now remove them manually from the server?
Cheers,
CLedero