Bjoern,

Thanks so much, I'll check it out. 

If I can't figure this out I am sure I can ask around in Montpellier at GCC'17! I am looking forward to the meeting and being able to visit Montpellier for the first time ever 

The help is greatly appreciated.

David



On Thu, Jun 1, 2017 2:21 PM, Björn Grüning bjoern.gruening@gmail.com wrote:

HI David,


have a look at https://galaxyproject.org/admin/config/jobs/


and this config file:


https://github.com/galaxyproject/galaxy/blob/dev/config/job_resource_params_conf.xml.sample


and here:


https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L791


I couldn't find more information, hope this gets you started!

Cheers,

Bjoern


Am 01.06.2017 um 20:48 schrieb David Kovalic:

> Bjoern,

>

> Thanks for the response.

>

> I agree with the first approach (admin control of the per tool

> environment). Do you know… are there docs or similar resources you could

> point me to that describe how to achieve this?

>

> Thanks again,

>

> David

>

>

>

> On Sun, May 28, 2017 4:41 AM, Björn Grüning bjoern.gruening@gmail.com

> <mailto:bjoern.gruening@gmail.com> wrote:

>

> __

>

> Hi David,

>

>

> this is possible via the GALAXY_SLOTS mechanism. An admin can give every

>

> tool it's own environment and can set GALAXY_SLOTS dynamically.

>

> A user can not do this, as this is highly dependent on the node this

>

> tool will run and normally a user does not know about this.

>

>

> However, if you really want to offer this to a user, Galaxy also offers

>

> to enable this option per tool level and will add additional parameter

>

> fields to set GALAXY_SLOTS as a user.

>

>

> Cheers,

>

> Bjoern

>

>

> Am 26.05.2017 um 20:23 schrieb David Kovalic:

>

> > Hi,

>

> >

>

> > Is it possible, and if so how, to run the galaxy devteam

>

> > (version 546ada4a9f43) of bwa_mem with the "-t" option and a value >1?

>

> >

>

> > "-t INT number of threads [1]"

>

> >

>

> >

>

> > This would be quite useful, and used, for accelerating single bwa

> mem jobs.

>

> >

>

> > Thanks,

>

> >

>

> > David

>

> >

>

> >

>

> >

>

> > ___________________________________________________________

>

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>