| Bjoern, Thanks so much, I'll check it out. If I can't figure this out I am sure I can ask around in Montpellier at GCC'17! I am looking forward to the meeting and being able to visit Montpellier for the first time ever  The help is greatly appreciated. David |
HI David,
have a look at https://galaxyproject.org/admin/config/jobs/
and this config file:
https://github.com/galaxyproject/galaxy/blob/dev/config/job_resource_params_conf.xml.sample
and here:
https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L791
I couldn't find more information, hope this gets you started!
Cheers,
Bjoern
Am 01.06.2017 um 20:48 schrieb David Kovalic:
> Bjoern,
>
> Thanks for the response.
>
> I agree with the first approach (admin control of the per tool
> environment). Do you know… are there docs or similar resources you could
> point me to that describe how to achieve this?
>
> Thanks again,
>
> David
>
>
>
> On Sun, May 28, 2017 4:41 AM, Björn Grüning bjoern.gruening@gmail.com
> <mailto:bjoern.gruening@gmail.com> wrote:
>
> __
>
> Hi David,
>
>
> this is possible via the GALAXY_SLOTS mechanism. An admin can give every
>
> tool it's own environment and can set GALAXY_SLOTS dynamically.
>
> A user can not do this, as this is highly dependent on the node this
>
> tool will run and normally a user does not know about this.
>
>
> However, if you really want to offer this to a user, Galaxy also offers
>
> to enable this option per tool level and will add additional parameter
>
> fields to set GALAXY_SLOTS as a user.
>
>
> Cheers,
>
> Bjoern
>
>
> Am 26.05.2017 um 20:23 schrieb David Kovalic:
>
> > Hi,
>
> >
>
> > Is it possible, and if so how, to run the galaxy devteam
>
> > (version 546ada4a9f43) of bwa_mem with the "-t" option and a value >1?
>
> >
>
> > "-t INT number of threads [1]"
>
> >
>
> >
>
> > This would be quite useful, and used, for accelerating single bwa
> mem jobs.
>
> >
>
> > Thanks,
>
> >
>
> > David
>
> >
>
> >
>
> >
>
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