Hi Lisa, The implicit conversion of your BED file to a GeneTrack file failed. The usual cause for this is a missing dependency such as tables or hdf5. Running the converter in a standalone mode (click on the pencil icon for the bed dataset and look for 'convert') should give some more information on the exact cause for this particular failure. Also, as you are accessing a server other than the ones provided by the Galaxy Team, please be aware that the GeneTrack application needs to be installed and configured separately from Galaxy at the institution. Thanks for using Galaxy, Dan On Mar 27, 2012, at 4:50 AM, Liusong Yang wrote:
Hello, I got this error when I am using the link of 'View in geneTrack' for a bed file in current history. I am wondering if anyone know it? Thanks.
URL: http://128.146.132.147:1234/display_application/9005c5112febe774/genetrack_i... File '/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/home/galaxy/galaxy-dist/lib/galaxy/web/controllers/dataset.py', line 829 in display_application display_link = display_app.get_link( link_name, data, dataset_hash, user_hash, trans ) File '/home/galaxy/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py', line 185 in get_link return PopulatedDisplayApplicationLink( self.links[ link_name ], data, dataset_hash, user_hash, trans ) File '/home/galaxy/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py', line 125 in __init__ self.ready, self.parameters = self.link.build_parameter_dict( self.data, self.dataset_hash, self.user_hash, trans ) File '/home/galaxy/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py', line 66 in build_parameter_dict if param.ready( other_values ): File '/home/galaxy/galaxy-dist/lib/galaxy/datatypes/display_applications/parameters.py', line 119 in ready raise Exception( 'A data display parameter is in the error state: %s' % ( self.name ) ) Exception: A data display parameter is in the error state: genetrack_file
Lisa ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: