The first issue is that when I ran 'LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py –e pbs_python' it failed to generate the pbs_python egg in the /galaxy-dist/eggs/ directory.

Secondly I copied the pbs_python-4.1.0-py2.6-linux-x86_64-ucs4.egg from my production galaxy server and restarted my test server. It appears to start, but when I attempt to run anything it uses the local runner and fails. The runner0.log shows the pbsjobrunner is loaded is below:

galaxy.jobs.handler DEBUG 2012-07-06 10:08:45,681 Loaded job runner: galaxy.jobs.runners.pbs:PBSJobRunner

galaxy.jobs.handler INFO 2012-07-06 10:08:45,682 job handler stop queue started

galaxy.jobs.manager INFO 2012-07-06 10:08:45,687 job manager queue started

galaxy.jobs.manager INFO 2012-07-06 10:08:45,688 job manager stop queue started

galaxy.jobs.handler INFO 2012-07-06 10:08:45,692 job handler queue started

I can't seem to get past this point since I upgraded. Can someone point me in the right direction?

Thanks,

Iry

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