Hi Richard, Well, I do have the same problem now (running bamtools), after applying the patch that should fix metadata issue we discussed yesterday. I'll dig into this. Marius On 17 July 2015 at 11:37, Poole, Richard <r.poole@ucl.ac.uk> wrote:
Hi all,
With the most recent update of Galaxy and also OS X 10.10.4 I am seeing this error message when first starting up the server:
/Users/galaxy/galaxy-dist/lib/galaxy/__init__.py:63: UserWarning: Module yaml was already imported from /Library/Python/2.7/site-packages/PyYAML-3.11-py2.7-macosx-10.10-intel.egg/yaml/__init__.pyc, but /Users/galaxy/galaxy-dist/eggs/PyYAML-3.10-py2.7-macosx-10.6-intel-ucs2.egg is being added to sys.path self.check_version_conflict()
This then is preventing certain tools from running correctly (such as samtools_filter (jjohnson) and they give the same error message when they fail:
/Users/galaxy/galaxy-dist/lib/galaxy/__init__.py:63: UserWarning: Module yaml was already imported from /Library/Python/2.7/site-packages/PyYAML-3.11-py2.7-macosx-10.10-intel.egg/yaml/__init__.pyc, but /Users/galaxy/galaxy-dist/eggs/PyYAML-3.10-py2.7-macosx-10.6-intel-ucs2.egg is being added to sys.path self.check_version_conflict()
Any thoughts?
Thanks, Richard
*Richard J Poole PhD* Wellcome Trust Fellow Department of Cell and Developmental Biology University College London 21 University Street, London WC1E 6DE Office (518 Rockefeller): +44 20 7679 6577 (int. 46577) Lab (529 Rockefeller): +44 20 7679 6133 (int. 46133)
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