Hi Kanwei,

Let me update the data types and try to upload the bedGraph format file. Thanks for your information. I will let you know when I encounter any error in display.

thanks, Vipin

On 28 April 2010 01:04, Kanwei Li <kanwei@gmail.com> wrote:
Hi Vipin,

Your file is actually not a bed file, it's a bedgraph. Please set the type to bedgraph and try it again..

On Tue, Apr 27, 2010 at 7:02 PM, Vipin TS <vipin.ts@gmail.com> wrote:

Hi Kanwei,

When uploading data set to the galaxy I selected the format as bed. The file size is 16 MB.

regards, Vipin T S

On 27 April 2010 19:25, Kanwei Li <kanwei@gmail.com> wrote:

Looks like bedgraph.. did you make sure that the datatype was set to bedgraph? How large is the data?

K

On Tue, Apr 27, 2010 at 1:23 PM, Vipin TS <vipin.ts@gmail.com> wrote:

Hi Kanwei,

I am sorry, I am using a BED formatted wiggle file. Here is first few lines from my file

track type=wiggle_0 name=polyA_left
chrIII 329     405     1
chrIII 1841    1868    1
chrIII 1868    1917    3
chrIII 1917    1944    2
chrIII 8486    8496    1
chrIII 8496    8498    12
chrIII 8498    8504    13
chrIII 8504    8509    14
chrIII 8509    8512    15
chrIII 8512    8551    18
chrIII 8551    8562    20
chrIII 8562    8572    19
chrIII 8572    8574    8
chrIII 8574    8579    7
chrIII 8579    8580    8
chrIII 8580    8585    7
chrIII 8585    8588    6
chrIII 8588    8627    3
chrIII 8627    8655    1

each line with four required fields, they are 1| chromosome/contig ID of the reference sequence, 2| feature start position 3| feature end position and 4| feature coverage score.

thnaks, Vipin T S

On 27 April 2010 19:17, Kanwei Li <kanwei@gmail.com> wrote:
Hi Vipin,

What is a bed wiggle file? We support both, but not at the same time :P

Kanwei