Peter wrote:
On Mon, Feb 21, 2011 at 2:43 PM, Nate Coraor <nate@bx.psu.edu> wrote:
Revival! (This thread was sitting "flagged" in my mailbox since November)
I guess I should try and file issues for things which don't get a prompt resolution on the mailing list, but its good to know it hadn't been forgotten.
I usually try to do this if I'm not going to be able to address an issue quickly, but don't always get to it. Feel free to do so yourself.
Hi all,
I've since restarted with a clean clone of the repository, and see the same problems. See:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-October/003625.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003645.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003665.html
Maybe I should be asking a different question: Has anyone ever used run_functional_tests.sh successfully on Mac OS X 10.6 Snow Leopard?
I was just creating a Bitbucket for this issue and realized that you've got a locally installed version of Paste (1.7.2) that is overriding the egg provided with Galaxy (1.6). The egg handling code was recently updated to prevent this from happening, could you pull the latest and see if you're still unable to run tests?
I'm running with a fresh hg clone of galaxy-central on Mac OS X 10.6, large changeset 5096:2c9ce797953d, and I still see the same kind of assertion failures, e.g.
$ ./run_functional_tests.sh -id ncbi_blastp_wrapper ... TwillAssertionError: code is 500 != 200 ...
However, from the stack trace it is still using the locally installed Paste 1.7.2 rather than the local file eggs/Paste-1.6-py2.5.egg which was fetched.
Okay, still a bug here with eggs and functional tests, it would appear. I'll have a look as soon as possible. --nate
Peter