Hello all,<br>I just updated our local copy of Galaxy and just wanted to try the new IGV display application. <br>When I try to display a BAM file with the local IGV or the web IGV I encounter following error complaining about the Null content-length.<br>




Has any of you encountered the same problem? Do I miss something?<br>Thanks in advance<br><br>Alex<br>
<br><br>INFO [2011-04-27 16:00:14,440]  [TrackManager.java:225] [Thread-6]  Loading1 resources.<br>ERROR [2011-04-27 16:00:14,589]  [SeekableHTTPStream.java:59] [Thread-6]  Null content-length for: <a href="http://localhost:8080/display_application/a1f8a55a946ee078/igv_bam/local/454edf2520b73a7e/data/galaxy_a1f8a55a946ee078.bam" target="_blank">http://localhost:8080/display_application/a1f8a55a946ee078/igv_bam/local/454edf2520b73a7e/data/galaxy_a1f8a55a946ee078.bam</a><br>





ERROR [2011-04-27 16:00:14,590]  [TrackLoader.java:821] [Thread-6]  Error loading sam track<br>java.lang.RuntimeException: Error loading file: <a href="http://localhost:8080/display_application/a1f8a55a946ee078/igv_bam/local/454edf2520b73a7e/data/galaxy_a1f8a55a946ee078.bam" target="_blank">http://localhost:8080/display_application/a1f8a55a946ee078/igv_bam/local/454edf2520b73a7e/data/galaxy_a1f8a55a946ee078.bam</a> NULL content-length<br>





    at org.broad.igv.util.SeekableHTTPStream.&lt;init&gt;(SeekableHTTPStream.java:60)<br>    at org.broad.igv.util.SeekableStreamFactory.getStreamFor(SeekableStreamFactory.java:42)<br>    at org.broad.igv.sam.reader.BAMHttpQueryReader.loadHeader(BAMHttpQueryReader.java:129)<br>





    at org.broad.igv.sam.reader.BAMHttpQueryReader.getHeader(BAMHttpQueryReader.java:70)<br>    at org.broad.igv.sam.reader.BAMHttpQueryReader.getSequenceNames(BAMHttpQueryReader.java:80)<br>    at org.broad.igv.sam.reader.CachingQueryReader.getSequenceNames(CachingQueryReader.java:97)<br>





    at org.broad.igv.sam.AlignmentDataManager.initChrMap(AlignmentDataManager.java:75)<br>    at org.broad.igv.sam.AlignmentDataManager.&lt;init&gt;(AlignmentDataManager.java:69)<br>    at org.broad.igv.sam.AlignmentDataManager.getDataManager(AlignmentDataManager.java:54)<br>





    at org.broad.igv.track.TrackLoader.loadAlignmentsTrack(TrackLoader.java:761)<br>    at org.broad.igv.track.TrackLoader.load(TrackLoader.java:143)<br>    at org.broad.igv.track.TrackManager.load(TrackManager.java:271)<br>





    at org.broad.igv.track.TrackManager.loadResources(TrackManager.java:241)<br>    at org.broad.igv.main.CommandExecutor.loadFiles(CommandExecutor.java:282)<br>    at org.broad.igv.main.CommandExecutor.hget(CommandExecutor.java:148)<br>





    at org.broad.igv.main.CommandExecutor.execute(CommandExecutor.java:88)<br>    at org.broad.igv.main.CommandListener.processGet(CommandListener.java:193)<br>    at org.broad.igv.main.CommandListener.run(CommandListener.java:93)<br>





    at java.lang.Thread.run(Thread.java:636)<br>ERROR [2011-04-27 16:00:14,592]  [TrackLoader.java:211] [Thread-6]  java.lang.RuntimeException: java.lang.RuntimeException: Error loading file: <a href="http://localhost:8080/display_application/a1f8a55a946ee078/igv_bam/local/454edf2520b73a7e/data/galaxy_a1f8a55a946ee078.bam" target="_blank">http://localhost:8080/display_application/a1f8a55a946ee078/igv_bam/local/454edf2520b73a7e/data/galaxy_a1f8a55a946ee078.bam</a> NULL content-length<br clear="all">





<br><br><br>___________________________________________________________<div>
<br>
                  Alexander Graf<br>
<br>
    Laboratory of Functional Genome Analysis<br>
    Gene Center, University of Munich (LMU)<br>
    Feodor-Lynen-Strasse 25; 81377 Munich; Germany<br>
    email: <a href="mailto:graf@lmb.uni-muenchen.de" target="_blank">graf@lmb.uni-muenchen.de</a><br>
    Internet: <a href="http://www.lafuga.de/genomics.htm" target="_blank">www.lafuga.de/genomics.htm</a><br>
 ___________________________________________________________</div><br>