Dear Galaxy team,
I have been making use of the workflow feature in Galaxy and I think it is an excellent way to make use of the tools and share analyses with others. Recently I have noticed that some of
steps within the workflow have been disconnected due to tool changes.
"Problems were
encountered loading this workflow (possibly a result of
tool upgrades). Please review the following parameters and then save."
A week ago I
reconnected the workflow steps yesterday found that some step were disconnected. I corrected this yesterday and was able to save and test it. Today
however I have returned to the workflow and the again several of the
connections between functions have been lost. I was planning on using
and publishing a link to this workflow (i.e. for a manuscript). Is
this a good idea or is it still a beta function which will not be
stable? I have a bit of a complex workflow and I am not sure if it is a
good idea to continue to repair it? Any feedback on how one should work with the workflows
would be great.
Perhaps one nice feature would be a way to freeze/lock-down a
workflow so it will run inspite of future Galaxy updgrades (in addition
to having a more plastic one that evolves along with the upgrades). Also a
way to export the workflow in a meaningful way would be useful as it
can be difficult to remember all the step once the links are broken.
Thanks again for your help.
Best regards,
Mike