Edward Kirton wrote:

Hello,

Is there a way to pass SGE options to the runner?  Specifically, i'd like to tell the scheduler the number of cores required by a tool (-pe).

Hi Ed,

Support for this was recently introduced.  It follows the format explained under "The job runner URL" here:

http://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster

--nate

Thanks,

Ed Kirton

US DOE JGI

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