Oups I made a mistake…. I have problems with the tophat wrapper, not bowtie. Bowtie runs fine…

Tophat - fast splice junction mapper for RNA-Seq reads

4eb3c3beb9c7

Devteam

Packages package_bowtie_2_2_5 and package_2_0_14 are installed…

Thanks

Martin

De : Laforest, Martin
Envoyé : 13 janvier 2016 09:43
À : 'galaxy-dev@lists.galaxyproject.org'
Objet : Bowtie2

Hello,

Please excuse my simple question since I’m a newbie… I’ve searched the mailing list but did not find the appropriate answer…

I have a new Galaxy installation. I installed the tool  “Bowtie2: Fast and sensitive read alignment” (Revision 019c2a81547a, Owner: devteam). The tool apparently runs fine and I can download the BAM file at the end and see its content (with IGV for example).

The problem is that my dataset is red and when I check the error, I get “OSError: [Errno 2] No such file or directory”… Maybe it is when Galaxy tries to set the data type, I don’t know.

Many thanks for your help.

Martin