Dear Greg,
In the latest version of the galaxy-central code there seems to be a bug preventing me from updating my tools. When I go to update a tool I get the following error
File '/var/www/galaxy/galaxyapp/eggs/Paste-1.6-py2.7.egg/paste/exceptions/errormiddleware.py', line 143 in __call__
app_iter = self.application(environ, start_response)
File '/var/www/galaxy/galaxyapp/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', line 80 in __call__
return self.application(environ, start_response)
File '/var/www/galaxy/galaxyapp/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', line 632 in __call__
return self.application(environ, start_response)
File '/var/www/galaxy/galaxyapp/lib/galaxy/web/framework/base.py', line 160 in __call__
body = method( trans, **kwargs )
File '/var/www/galaxy/galaxyapp/lib/galaxy/web/framework/__init__.py', line 173 in decorator
return func( self, trans, *args, **kwargs )
File '/var/www/galaxy/galaxyapp/lib/galaxy/web/controllers/admin_toolshed.py', line 96 in browse_repositories
return self.check_for_updates( trans, **kwd )
File '/var/www/galaxy/galaxyapp/lib/galaxy/web/framework/__init__.py', line 173 in decorator
return func( self, trans, *args, **kwargs )
File '/var/www/galaxy/galaxyapp/lib/galaxy/web/controllers/admin_toolshed.py', line 654 in check_for_updates
( tool_shed_url, url_for( '/', qualified=True ),
repository.name, repository.owner, repository.changeset_revision )
ValueError: unsupported format character '/' (0x2f) at index 1
Looking at the code there seems to be a typo on line 702 of admin_toolshed.py
It reads
url = '%/srepository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \
But I think it should be
url = '%s/repository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \
When I change this though I still get further errors ... seems like a query to the database is not finding my toolshedrepository
The new error is
File '/Users/iracooke/Sources/galaxy-proteomics/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond
app_iter = self.application(environ, detect_start_response)
File '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/debug/prints.py', line 98 in __call__
environ, self.app)
File '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/wsgilib.py', line 539 in intercept_output
app_iter = application(environ, replacement_start_response)
File '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', line 80 in __call__
return self.application(environ, start_response)
File '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', line 632 in __call__
return self.application(environ, start_response)
File '/Users/iracooke/Sources/galaxy-proteomics/lib/galaxy/web/framework/base.py', line 160 in __call__
body = method( trans, **kwargs )
File '/Users/iracooke/Sources/galaxy-proteomics/lib/galaxy/web/framework/__init__.py', line 173 in decorator
return func( self, trans, *args, **kwargs )
File '/Users/iracooke/Sources/galaxy-proteomics/lib/galaxy/web/controllers/admin_toolshed.py', line 772 in update_to_changeset_revision
id=trans.security.encode_id( repository.id ),
AttributeError: 'NoneType' object has no attribute 'id'
If I browse my database I can find an entry in the tool_shed_repositories table which seems to have all the right data.
I'm getting these errors on the latest version of the galaxy-central code.
Ira