So I am doing some debugging and it looks like in the from_html function in the SelectToolParameter class, it gets the legal values for the build using the get_legal_values function. This returns the correct values when I choose only one gtf file, but when I choose multiple gtf files the list of legal values is empty. I haven't figured out why this is happening.

- Nik.

On Wed, Feb 18, 2015 at 10:45 PM, Nikhil Joshi <najoshi@ucdavis.edu> wrote:

And, yes, all of the gtf files have the correct database build associated with them.

On Wed, Feb 18, 2015 at 6:29 PM, Nikhil Joshi <najoshi@ucdavis.edu> wrote:

Hi all,

We run our own custom galaxy instance in the Amazon Cloud and I am updating our instance with the latest toolshed files. For cuffmerge, in past revisions, we would just have a button to add another GTF input. However, this latest one (10:b6e3849293b1) that has been replaced with a multi-select. We also have a few built-in genomes that we use with cuffmerge. When I choose the first GTF file (using locally cached sequence data) it will populate the reference genome correctly with our built-in genomes. However, once I choose more than one GTF file, I get one of two errors:

 No reference genome is available for the build associated with the selected input dataset

OR

 An invalid option was selected, please verify

The built-in genomes are definitely there and available for cuffmerge, but for some reason choosing more than one GTF file in the multi-select causes an error. Is this a bug or am I doing something wrong?

- Nik.

--

Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)

--

Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)

--

Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)

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