Hello,<br><br>I am trying to get the reference genomes to appear in our NGS tools. In my bowtie.loc file for instance I have the following line:<br><br>hg18   /share/shared/data/genomes/hg18/bowtie/Homo_sapiens_assembly18.fasta.1.eb<br>
wt<br><br>[galaxy@ tool-data]$ cd /share/shared/data/genomes/hg18/bowtie/                              <br>[galaxy]$ ls <br>Homo_sapiens_assembly18.fasta.1.ebwt  Homo_sapiens_assembly18.fasta.4.ebwt<br>Homo_sapiens_assembly18.fasta.2.ebwt  Homo_sapiens_assembly18.fasta.rev.1.ebwt<br>
Homo_sapiens_assembly18.fasta.3.ebwt  Homo_sapiens_assembly18.fasta.rev.2.ebwt<br><br>Do the files provided in the .loc file have to be fasta files? Where can these fasta files be obtained?<br><br>-Rob<br>