Hi Greg, Fantastic, thanks for your detailed answer! I am trying out some things and I noticed that it is not possible to select a specific revision of a repository for installation (see screenshot). I thought I saw you present something like this at Oslo...is that possible ? [cid:image001.png@01CEAFB8.216DF2A0] Regards, Pieter. From: Greg Von Kuster [mailto:greg@bx.psu.edu] Sent: woensdag 11 september 2013 19:25 To: Lukasse, Pieter Cc: Galaxy Dev Subject: Re: HOWTO for making new toolshed package Hello Pieter, Please send questions like this to the galaxy-dev@bx.psu.edu<mailto:galaxy-dev@bx.psu.edu> or galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu> mailing list rather than individual email addresses to ensure optimal, timely responses. The Tool Shed wiki contains all of the information you need: http://wiki.galaxyproject.org/Tool%20Shed This page provides a nice overview of repository features: http://wiki.galaxyproject.org/ToolShedRepositoryFeatures See additional specific pages below for each item you've listed: On Sep 11, 2013, at 11:52 AM, "Lukasse, Pieter" <pieter.lukasse@wur.nl<mailto:pieter.lukasse@wur.nl>> wrote: Hi Greg, I want to make a toolshed package with the following contents: The above "package" is actually a mercurial repository in the tool shed. * A number of tools The following pages will provide all of the information you'll need for building Galaxy tools for the Tool Shed. http://wiki.galaxyproject.org/ToolShedToolFeatures * Some workflows The following pages provide information for enabling workflow sharing via the Tool Shed. http://wiki.galaxyproject.org/ToolShedWorkflowSharing * Datatypes Datatype features in the Tool Shed are described in the following pages: http://wiki.galaxyproject.org/ToolShedDatatypesFeatures * Installation configurations for installing external tools like R, Gnuplot and X!Tandem The above information is document in the "ToolShedToolFeatures" section of the wiki, specifically in the following pages: http://wiki.galaxyproject.org/ToolShedToolFeatures#Automatic_third-party_too... * Dependencies configurations to other packages If by "packages", you are referring to other tool shed repositories, then the documentation describing defining these relationships is located in the following pages: http://wiki.galaxyproject.org/DefiningRepositoryDependencies Is there a HOWTO wiki page where I can find exactly which files I should add to the .zip file and how they should be named? Or maybe an example package which I could use? Regards, Pieter Lukasse Wageningen UR, Plant Research International Departments of Bioscience and Bioinformatics Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands +31-317480891; skype: pieter.lukasse.wur http://www.pri.wur.nl<http://www.pri.wur.nl/>
