laxy.datatypes.metadata DEBUG 2014-08-01 17:14:40,572 loading metadata from file for: HistoryDatasetAssociation 192134
galaxy.jobs INFO 2014-08-01 17:14:40,804 Collecting job metrics for <galaxy.model.Job object at 0x7f15fc281850>
galaxy.datatypes.metadata DEBUG 2014-08-01 17:14:40,815 Cleaning up external metadata files
python path is: /mnt/galaxy/data/galaxy/galaxy-dist/eggs/kombu-3.0.12-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/anyjson-0.3.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/numpy-1.6.0-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/mercurial-2.2.3-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pycrypto-2.5-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/python_lzo-1.08_2.03_static-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/bx_python-0.7.2-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/amqp-1.4.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pexpect-2.4-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/Babel-1.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pytz-2013.9-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebHelpers-1.3-py2.7.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/MarkupSafe-0.12-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Routes-1.12.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/wchartype-0.1-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/docutils-0.7-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/PasteDeploy-1.5.0-py2.7.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/lib, /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/cutadapt-1.3-py2.7-linux-x86_64.egg, /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/distribute-0.6.10-py2.7.egg,
/mnt/galaxy/data/galaxy/sw/lib/python27.zip, /mnt/galaxy/data/galaxy/sw/lib/python2.7, /mnt/galaxy/data/galaxy/sw/lib/python2.7/plat-linux2, /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-tk, /mnt/galaxy/da
ta/galaxy/sw/lib/python2.7/lib-old, /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-dynload, /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages
172.17.130.113 - - [01/Aug/2014:17:14:58 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:03 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Ge
cko) Chrome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:15:03 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0
.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:15:04 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Ge
cko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:07 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:09 -0400] "GET /datasets/49b19822485c7897/show_params HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrom
e/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:11 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:12 -0400] "GET /api/histories/39a249c523d1b262/contents/datasets/49b19822485c7897 HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac
OS X 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:15:12 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0.4 Safari/537.76.4"
172.17.131.223 - - [01/Aug/2014:17:15:20 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0.4 Safari/537.76.4"
172.17.131.223 - - [01/Aug/2014:17:15:29 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0.4 Safari/537.76.4"
172.17.131.223 - - [01/Aug/2014:17:15:37 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0.4 Safari/537.76.4"
172.17.131.223 - - [01/Aug/2014:17:15:46 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0.4 Safari/537.76.4"
python path is: /mnt/galaxy/data/galaxy/galaxy-dist/eggs/kombu-3.0.12-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/anyjson-0.3.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/numpy-1.6.0-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/mercurial-2.2.3-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pycrypto-2.5-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/python_lzo-1.08_2.03_static-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/bx_python-0.7.2-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/amqp-1.4.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pexpect-2.4-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/Babel-1.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pytz-2013.9-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebHelpers-1.3-py2.7.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/MarkupSafe-0.12-py2.7-linux-x86_64-ucs2.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Routes-1.12.3-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs2.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/wchartype-0.1-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/docutils-0.7-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/eggs/PasteDeploy-1.5.0-py2.7.egg,
/mnt/galaxy/data/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg, /mnt/galaxy/data/galaxy/galaxy-dist/lib, /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/cutadapt-1.3-py2.7-linux-x86_64.egg, /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/distribute-0.6.10-py2.7.egg,
/mnt/galaxy/data/galaxy/sw/lib/python27.zip, /mnt/galaxy/data/galaxy/sw/lib/python2.7, /mnt/galaxy/data/galaxy/sw/lib/python2.7/plat-linux2, /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-tk, /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-old, /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-dynload,
/mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages
tool_shed.tool_shed_registry DEBUG 2014-08-01 17:16:41,474 Loading references to tool sheds from tool_sheds_conf.xml
172.17.130.113 - - [01/Aug/2014:17:14:25 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:14:25 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0
.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:14:29 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:14:34 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0
.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:14:36 -0400] "GET /datasets/7423d3ce9d139cc4/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Ge
cko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:14:37 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:14:42 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0
.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:14:46 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:14:47 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Ge
cko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:14:50 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:14:51 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0
.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:14:54 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Ge
cko) Chrome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:14:59 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0
.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:15:02 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Ge
cko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:03 -0400] "GET /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chr
ome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:04 -0400] "GET /datasets/49b19822485c7897/show_params HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrom
e/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:07 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrome/36.0.1985.125 Safari/537.36"
172.17.131.223 - - [01/Aug/2014:17:15:08 -0400] "GET /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - "
http://galaxy.neb.com/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.76.4 (KHTML, like
Gecko) Version/7.0.4 Safari/537.76.4"
172.17.130.113 - - [01/Aug/2014:17:15:10 -0400] "GET /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:11 -0400] "GET /datasets/49b19822485c7897/show_params HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:12 -0400] "GET /api/histories/39a249c523d1b262 HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (KHTML,
like Gecko) Chrome/36.0.1985.125 Safari/537.36"
172.17.130.113 - - [01/Aug/2014:17:15:15 -0400] "GET /dataset/errors?id=49b19822485c7897 HTTP/1.0" 200 - "
http://galaxy.neb.com/root/index" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36
(KHTML, like Gecko) Chrome/36.0.1985.125 Safari/537.36"