[galaxy-dev] CloudMan: Command not found

Hi Galaxy Team, I'm modifying my Galaxy CloudMan instance by adding custom tools. I've installed my tools under the /mnt/galaxyTools/tools folder and I've modified the .bashrc files from the sgeadmin and galaxy users to add the needed paths to the PATH and PYTHONPATH variables. When I'm in Galaxy and I try to launch one of my tools, it fails and shows the 'Command not found' error. Where I should add the paths to make Galaxy now where are my executables? Whan I log into the isntance through ssh and I use the galaxy user, it knows where are my executables. What I'm missing? Thanks,Jose