Hi there all,

Has anyone had success setting up job_conf.xml for slurm based clusters? I am having trouble getting the GALAXY_SLOTS env var set for any jobs. I've tried looking at destinations in the job_conf.xml but can't get SLURM_NTASKS to be set correctly so the slurm run script can translate that into GALAXY_SLOTS..

Does anyone have a toy example of a job_conf.xml for slurm that they wouldn't mind sharing?

Cheers,

Simon.

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Simon Gladman | Bioinformatician
Victorian Life Sciences Computation Initiative - LSCC
700 Swanston Street, The University of Melbourne | Victoria 3010 Australia
T +61 3 9035 5822 | M 0418 421 077