You will also need to have uWSGI installed. There are a variety of ways to do this. It can be installed system-wide by installing from your system's package manager (on Debian and Ubuntu systems, the uwsgi and uwsgi-plugin-python provide the necessary components), or with theeasy_install or pip commands (which will install it to the system's Python site-packages directory). Alternatively, if you are already running Galaxy from a Python virtualenv, you can use pip install uwsgi with that virtualenv's copy of pip to install to that virtualenv as your unprivileged Galaxy user.
Hello,
I am trying to setup a local production Galaxy server for our
department. Our Galaxy server environment is as follows:
- Ubuntu 14.04 64-bit
- 94 GB Memory
- Intel Xeon
- Python virtual environment
- Nginx
- PostgreSQL
- ProFTPd
Today I tried starting the Galaxy server for the first time. I think
the first step in that process is starting uWSGI, correct? To do so, I
executed these commands:
cd ~/galaxy-dist/
PYTHONPATH=eggs/PasteDeploy-1.5.0-py2.7.egg uwsgi --ini-paste config/galaxy.ini
However, it appears something failed. This information is returned:
The program 'uwsgi' can be found in the following packages:
* uwsgi-core
* uwsgi-plugin-alarm-curl
* uwsgi-plugin-alarm-xmpp
* uwsgi-plugin-curl-cron
* uwsgi-plugin-emperor-pg
* uwsgi-plugin-erlang
* uwsgi-plugin-geoip
* uwsgi-plugin-graylog2
* uwsgi-plugin-jvm-openjdk-6
* uwsgi-plugin-jvm-openjdk-7
* uwsgi-plugin-ldap
* uwsgi-plugin-lua5.1
* uwsgi-plugin-lua5.2
* uwsgi-plugin-php
* uwsgi-plugin-psgi
* uwsgi-plugin-python
* uwsgi-plugin-python3
* uwsgi-plugin-rack-ruby1.9.1
* uwsgi-plugin-router-access
* uwsgi-plugin-sqlite3
* uwsgi-plugin-v8
* uwsgi-plugin-xslt
Ask your administrator to install one of them
According to the galaxy documentation at
https://wiki.galaxyproject.org/Admin/Config/Performance/Scaling ,
"uWSGI support is built in to nginx, so no extra modules or
recompiling should be required".
Also, should '--ini-paste config/galaxy.ini' really be configured like
this instead: --ini-paste universe_wsgi.ini ?
Thank you
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