Re: [galaxy-dev] setting per-tools parameters for SGE job runner

Andreas Kuntzagk wrote:

I have galaxy running now with SGE job runners. I also managed to set PATH now using .sge_request. What I want to do now is to set some SGE parameters for some special tools which need special parameters (e.q. a parallel env. ) Is there a way to set them in galaxy (maybe using the job runner URL)? Or do I need to write wrappers?

Hi Andreas, We'd like to be able to define specific required resources or perhaps even scheduler options in the future, but unfortunately for the moment the only way to do this is to create a separate queue (the assigned nodes can overlap those assigned to your default queue) that sets the options you need, and then point the tool at this new queue. --nate