Neil, AFAIK, python will not load a module unless the relevant script file is marked as executable by the current user? Try something like: chmod ugo+x scripts/db_shell.py and see if that fixes your problem? On Tue, Apr 30, 2013 at 11:50 AM, <Neil.Burdett@csiro.au> wrote:
Hi, I'm trying to use the tool, however, when I run it I get:
python create_galaxy_users.py
Traceback (most recent call last): File "create_galaxy_users.py", line 2, in <module> from scripts.db_shell import * ImportError: No module named scripts.db_shell
I've set my PYTHONPATH to be ~/galaxy-dist/lib. What else do I need to do? I'm running the script from ~/galaxy-dist/ directory, but I get the same error if I copy it into the scripts directory. I've checked and I can see that the scripts.db_shell.py script exists
If I comment out the line then the next error I get is:
python create_galaxy_users.py Traceback (most recent call last): File "create_galaxy_users.py", line 7, in <module> from galaxy.security import GalaxyRBACAgent File "/home/galaxy/galaxy-dist/lib/galaxy/security/__init__.py", line 9, in <module> from galaxy.model.orm import * File "/home/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 15, in <module> from galaxy.security import RBACAgent, get_permitted_actions ImportError: cannot import name RBACAgent
Any help much appreciated
Neil ----------------------------------------------------------------------
Message: 1 Date: Sat, 27 Apr 2013 14:07:49 -0500 From: John Chilton <chilton@msi.umn.edu> To: Adam Brenner <aebrenne@uci.edu> Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu> Subject: Re: [galaxy-dev] Command Line Tool for Creating New Users Message-ID: < CANwbokctvXO-DFmamr77FU6BbDHGR1STG7mpH_LP+fE2nMcnag@mail.gmail.com> Content-Type: text/plain; charset=ISO-8859-1
I put together a script to do this. It is described in the galaxy-dev thread titled: "[galaxy-dev] user creation using API". It doesn't actually use the API, it uses the db_shell.py script.
Hope this helps.
-John