On Fri, Feb 8, 2013 at 4:30 PM, Nicola Soranzo <soranzo@crs4.it> wrote:
Il giorno mer, 06/02/2013 alle 20.01 +0100, Nicola Soranzo ha scritto:
Hi Peter, I added these file formats mostly as placeholders for a future implementation. Now I have changed a bit the tool by removing acclist and seqloc_xml formats since they are not recognized by the last versions of dustmasker (I also sent an email to blast-help@ncbi.nlm.nih.gov to inform them of this bug). As before, you can find the new version at:
https://bitbucket.org/nsoranzo/ncbi_blast_plus
I stripped the old commit and did a new one, not a very good practice, sorry about that.
It seems to have confused the bitbucket page a little, but I have checked in your initial wrapper to my development repository (I use the tools branch): https://bitbucket.org/peterjc/galaxy-central/commits/2284d485e36f74f19b0dbe7... Note I'm not going to include this in the Tool Shed release yet, we need to sort out the file format definitions first.
Hi Peter, I've added a new commit to this repo which updates the test output files to (recommended) BLAST 2.2.26+, since functional tests were returning errors.
Hope you find it useful.
Also applied to my branch, thank you - I'd forgotten to update that (but intend at some point to refresh the test files and dependency install to use BLAST 2.2.27+ instead): https://bitbucket.org/peterjc/galaxy-central/commits/f1f912f63bb4174f434e3f4... Sadly I've not actually got the unit tests to run at all yet, see: http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-February/013245.html Regards, Peter