Sorry for the late response. Thanks for your help. On Wed, Jan 4, 2012 at 2:32 PM, Carlos Borroto <carlos.borroto@gmail.com>wrote:
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad <Langhorst@neb.com> wrote:
Usha:
Galaxy is essentially a wrapper around other command line tools. So, while you could probably extract some of its pieces to run on the command line, I don't know why you would want to.
I would argue it would be beneficial to invoke pipelines from the command line instead of being forced to use the web-based interface. command
On Wed, Jan 4, 2012 at 2:25 PM, Ryan <ngsbioinformatics@gmail.com> wrote: line
is beneficial for large #'s of datasets that need to be analyzed.
Ryan
I think Ryan is right and I think that's exactly the niche for the API.
Usha you could take a look into: http://wiki.g2.bx.psu.edu/Learn/API
It seems there is very limited documentation, but it might help you to see if what you want is already possible.
Regards, Carlos