On Feb 19, 2014 10:08 AM, "Carlos Borroto" <carlos.borroto@gmail.com> wrote:

On Wednesday, February 19, 2014, Peter Cock <p.j.a.cock@googlemail.com> wrote:

On Wed, Feb 19, 2014 at 2:16 PM, John Chilton <jmchilton@bx.psu.edu> wrote:
> Hey Peter,
>
> Have you seen this solution?
>
> https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run
>
> It always seems to get mentioned when this topic is brought up. It has
> serious limitations in terms or workflow running, but it can probably
> be made to work for individual tool executions.

Hmm. Any real life examples of this in use? I guess looking for
the magic string $__new_file_path__ in the <command> tag
is the only way to identify this?

Hi Peter,

I used the current functionality here:

http://toolshed.g2.bx.psu.edu/view/cjav/split_by_barcode

The code for the underlining tool is available here:

https://github.com/cjav/ngs-tools

Hope it helps,

Carlos 

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