Hi Scott,

The quick fix is to source your virtualenv first and you should be good to go.

-Dannon

On Fri, May 20, 2016 at 9:07 AM Scott Szakonyi <Scott.B.Szakonyi.1@nd.edu> wrote:

Hi all,

I'm getting an error when executing the cleanup scripts in Galaxy 16.01. It appears the script is unable to import sqlalchemy, but my understanding is that Galaxy can't function without it, so I'm at a loss to explain. Here's the error I'm getting:

$ sh scripts/cleanup_datasets/delete_userless_histories.sh

Traceback (most recent call last):

  File "./scripts/cleanup_datasets/cleanup_datasets.py", line 13, in <module>

    import sqlalchemy as sa

ImportError: No module named sqlalchemy

We have relatively limited space on our storage server, so it's imperative that I be able to execute these scripts and be able to clean up deleted material. I welcome any suggestions.

Best regards,

--

Scott B. Szakonyi

Research Programmer

Center for Research Computing
107 Information Technology Center
Notre Dame, IN 46556
http://crc.nd.edu

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