I'm assuming you're referring to main.g2.bx.psu.edu's tool configuration as a reference. Some of these components are installed via the tool shed, and others may have been manually added to main and are not included in the base tool_conf.xml.sample. I may be able to point you in the right direction, though -- what is it that you're trying to do?

-Dannon

On Tue, May 21, 2013 at 3:31 PM, vijayalakshmi <vijiraghs@gmail.com> wrote:

Hi all,

I am trying to get the "tool_conf.xml" <section> code corresponding to the following topics listed below. I am unable to find it in both the default build and the stable build in bitbucket. If you can point me to where I can find it, it'd be swell.

1) NGS: Variant detection
2) NGS: Picard(beta)
3) BEDTools
4) SnpEff

Thanks,
VJ.

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/