Hi,

Have you created the index files using the exact same version of bwa? I've had segfaults when using references indexed on a different computer running a different version.

Geert

On 05/28/2012 08:54 PM, CHEBBI Mohamed Amine wrote:

Hi !
I have a problem when i execute BWA from my local galaxy instance. I have this error message :

An error occurred running this job:BWA Version: 0.6.1-r104
Error indexing reference sequence. [bwa_index] Pack FASTA... 2.35 sec
[bwa_index] Construct BWT for the packed sequence...
Segmentation fault

Could anyone help me to fix it thanks !

Regards

Amine
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