Re: [galaxy-dev] Multiple output tools in Workflow

17 Jul 2014

      Hello Peter,

Thanks for your answer.

I tried your come but I am still not able to make it work the way I want.
I mean that in the workflow design page, when I switch the parameter, it
doesn't change the graphical list of outputs of the tool. How can I fix it?
I want something like the Input, where it shows different outputs according
to the selected parameter from the select.

Here is the XML code:

    <inputs>
        <param name="input_dataset" label="Input dataset (ShoweLab or FBK
Format) to split" type="data" format="showelab-dataset,fbk-svm-dataset"/>
        <conditional name="format_condition">

            <param name="format_options" label="Choose the type of dataset
you want to split" type="select">
                <option value="fbk">FBK Format</option>
                <option value="showelab" selected="True">ShoweLab
Format</option>
            </param>
            <when value="fbk">
                <param name="input_fbk_dataset_labels" label="Input dataset
labels (FBK Format) to split" type="data" format="fbk-labels"/>
            </when>
            <when value="showelab" />
        </conditional>
        <param name="split_perc" label="Percentage of Training Set among
complete dataset" type="float" min="0.05" max="0.95" value="0.75"/>
    </inputs>
    <outputs>
        <data format="showelab-dataset" name="trainingDataset"
label="Training Dataset extracted from ${input_dataset.name}">
            <filter>format_condition["format_options"] ==
"showelab"</filter>
        </data>
        <data format="showelab-dataset" name="validationDataset"
label="Validation Dataset extracted from ${input_dataset.name}">
            <filter>format_condition["format_options"] ==
"showelab"</filter>
        </data>
        <data format="fbk-svm-dataset" name="trainingDataset"
label="Training Dataset extracted from ${input_dataset.name}">
            <filter>format_condition["format_options"]  == "fbk"</filter>
        </data>
        <data format="fbk-labels" name="trainingLabels" label="Training
Dataset Labels extracted from ${input_fbk_dataset_labels.name}">
            <filter>format_condition["format_options"]  == "fbk"</filter>
        </data>
        <data format="fbk-svm-dataset" name="validationDataset"
label="Validation Dataset extracted from ${input_dataset.name}">
            <filter>format_condition["format_options"]  == "fbk"</filter>
        </data>
        <data format="fbk-labels" name="validationLabels" label="Validation
Dataset Labels extracted from ${input_fbk_dataset_labels.name}">
            <filter>format_condition["format_options"]  == "fbk"</filter>
        </data>
    </outputs>

On Wed, Jul 16, 2014 at 6:54 PM, Peter Cock <p.j.a.cock@googlemail.com>
wrote:
...
On Wed, Jul 16, 2014 at 5:28 PM, Calogero Zarbo <zarbo@fbk.eu> wrote:
...
Hello to everybody
I'm developing my own tool that need to switch the numbers of output
files
according to a parameter selected by the user from a list in the <inputs>
tag.
How can I do such thing?
Here is the XML code:
    <inputs>
        <param name="input_dataset" label="Input dataset" type="data"
format="showelab-dataset,fbk-svm-dataset"/>
        <conditional name="format_condition">
<param name="format_options" label="Choose the type of
dataset
you want to split" type="select">
                <option value="fbk">".fbk-svm-dataset" Format</option>
                <option value="showelab"
selected="True">".showelab-dataset"
Format</option>
            </param>
            <when value="fbk">
                <param name="input_fbk_dataset_labels" label="Input
dataset
labels" type="data" format="fbk-labels"/>
            </when>
        </conditional>
</inputs>
    <outputs>
        <data format="showelab-dataset" name="trainingDataset"
label="Training Dataset extracted from ${input_dataset.name}">
            <filter>format_options == "showelab"</filter>
        </data>
        <data format="showelab-dataset" name="validationDataset"
label="Validation Dataset extracted from ${input_dataset.name}">
            <filter>format_options == "showelab"</filter>
        </data>
        <data format="fbk-svm-dataset" name="trainingDataset"
label="Training Dataset extracted from ${input_dataset.name}">
            <filter>format_options == "fbk"</filter>
        </data>
        <data format="fbk-labels" name="trainingLabels" label="Training
Dataset Labels extracted from ${input_fbk_dataset_labels.name}">
            <filter>format_options == "fbk"</filter>
        </data>
        <data format="fbk-svm-dataset" name="validationDataset"
label="Validation Dataset extracted from ${input_dataset.name}">
            <filter>format_options == "fbk"</filter>
        </data>
        <data format="fbk-labels" name="validationLabels"
label="Validation
Dataset Labels extracted from ${input_fbk_dataset_labels.name}">
            <filter>format_options == "fbk"</filter>
        </data>
</outputs>
Basically I would like to have in the Workflow Canvas that the outputs
displayed in the interface will change according to the format_options
select parameter.
Thanks in advance.
Hi Calogero,
I think this tool of mine would serve as a working example:
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id
Peter
-- 
Calogero Zarbo

FBK - Fondazione Bruno Kessler
Center for Information Technology
Mpba - Predictive Models for Biomedicine & Environment
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