On Mon, Jan 28, 2013 at 5:29 PM, Greg Von Kuster <greg@bx.psu.edu> wrote:
And that did the trick. Is this the expected way of handling these cases?.
Yes, however, if your install the repository from the Galaxy administrator interface, this should all happen automatically for you. If you download the repository as a tar archive and manually install it from outside of the Galaxy interface, you'll have to do all of this manually.
I guess I overwrote the main tool_data_table_conf.xml with the sample one at some point, cause I don't remember installing this repository manually.
The next paragraph in the same wiki page clarifies this:
For those tools that include dynamically generated select list parameters that require a missing entry in the tool_data_table_conf.xml file, this file will be modified in real time by adding the entry from a tool_data_table_conf.xml.sample file contained in the tool shed repository.
Ooops, I stopped reading too soon. Thanks, Carlos