Hmm... unfortunately I have no particular guess about either of these issues. It sounds like you upgraded Galaxy and made large changes to your configuration at the same time. Can you try just one process and no load balancer so you can determine if the issue is with the Apache configuration or the latest version of Galaxy. If that works - can you just do one web process and one handler and see if the problems persist? The goal would be to scale up, but still figure out at what point the problems start. -John On Tue, Mar 11, 2014 at 1:30 PM, Alper Kucukural <alper@kucukural.com> wrote:
Hi All, I have installed the recent version of galaxy and starting multiple web and job handlers(six each) on a Centos 5.1 machine. It is working almost perfectly. 1. The first problem is sometimes jobs never start and they are in grey stage. After I killed them and start again, they work fine. There are no any log about why they haven't started. So, if you direct me to find the reason, it would be great.
2. Second problem is about UCSC visualization issue using the links from history. I haven't found a solution yet, my XSendFile is all set and working in the previous version but not this one. The only difference is I am using the new version and balancer in Apache since I run multiple instances. So, balancer might not use XSendFile properly or there is a configuration problem.
http://lists.bx.psu.edu/pipermail/galaxy-user/2012-November/005508.html https://wiki.galaxyproject.org/Admin/Config/ApacheProxy
Let me know, if anybody has a similar settings and solved this problem with Apache. Best,
Alper Kucukural, PhD Bioinformatics Core, University of Massachusetts Medical School 368 Plantation St.Room AS4.2067 Worcester, MA 01605-2324 Phone: 774-312-4493 E-mail: alper@kucukural.com
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